Commit b8a8fc33 authored by Claudia Canevari's avatar Claudia Canevari
Browse files

removed source files for user guide building

parent e7ed1342
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\begin{thebibliography}{1}
\bibitem{blobby}
Y.~Zhang G. Xu~C. Bajaj.
\newblock Quality meshing of implicit solvation models of biomolecular
structures.
\newblock {\em Computer Aided Geometric Design}, 23:510530, 2006.
\bibitem{noi}
Sergio Decherchi and Walter Rocchia.
\newblock A general and robust ray casting based algorithm for triangulating
surfaces at the nanoscale.
\newblock {\em PLOS ONE}, 8(4), 2013.
\bibitem{Skin}
H.~Edelsbrunner.
\newblock Deformable smooth surface design.
\newblock {\em Discrete and Computational Geometry}, 21(1):87--115, 1999.
\bibitem{ray}
M.~Phillips, I.~Georgiev, A.K. Dehof, S.~Nickels, L.~Marsalek, H.-P. Lenhof,
A.~Hildebrandt, and P.~Slusallek.
\newblock Measuring properties of molecular surfaces using ray casting.
\newblock In {\em Parallel Distributed Processing, Workshops and Phd Forum
(IPDPSW), 2010 IEEE International Symposium on}, pages 1 --7, april 2010.
\bibitem{sanner}
M.~F. Sanner, A.~J. Olson, and J.C. Spehner.
\newblock Reduced surface: An efficient way to compute molecular surfaces.
\newblock {\em Biopolymers}, 38:305320, 1996.
\end{thebibliography}
This is BibTeX, Version 0.99dThe top-level auxiliary file: UserGuide.aux
The style file: plain.bst
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\BOOKMARK [1][-]{section.1}{What's new}{}% 1
\BOOKMARK [1][-]{section.2}{Compilation/Installation}{}% 2
\BOOKMARK [2][-]{subsection.2.1}{Automatic mode for Linux/Mac}{section.2}% 3
\BOOKMARK [2][-]{subsection.2.2}{Manual mode for any OS}{section.2}% 4
\BOOKMARK [1][-]{section.3}{Usage}{}% 5
\BOOKMARK [2][-]{subsection.3.1}{Triangulation}{section.3}% 6
\BOOKMARK [2][-]{subsection.3.2}{Cavity Detection}{section.3}% 7
\BOOKMARK [2][-]{subsection.3.3}{Pocket detection}{section.3}% 8
\BOOKMARK [2][-]{subsection.3.4}{DelPhi interfacing}{section.3}% 9
\BOOKMARK [1][-]{section.4}{Python interfacing}{}% 10
\BOOKMARK [1][-]{section.5}{Configuration file keywords}{}% 11
\BOOKMARK [2][-]{subsection.5.1}{Global parameters}{section.5}% 12
\BOOKMARK [2][-]{subsection.5.2}{Maps settings}{section.5}% 13
\BOOKMARK [2][-]{subsection.5.3}{Surface parameters}{section.5}% 14
\BOOKMARK [2][-]{subsection.5.4}{Mesh settings}{section.5}% 15
\BOOKMARK [2][-]{subsection.5.5}{Acceleration Grid Settings}{section.5}% 16
\BOOKMARK [2][-]{subsection.5.6}{File storage and others}{section.5}% 17
\BOOKMARK [1][-]{section.6}{Extending the framework}{}% 18
\BOOKMARK [1][-]{section.7}{Examples}{}% 19
This diff is collapsed.
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year = {2013},
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doi = {10.1016/j.cad.2009.10.003},
acmid = {1750624},
publisher = {Butterworth-Heinemann},
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@INPROCEEDINGS{ray,
author={Phillips, M. and Georgiev, I. and Dehof, A.K. and Nickels, S. and Marsalek, L. and Lenhof, H.-P. and Hildebrandt, A. and Slusallek, P.},
booktitle={Parallel Distributed Processing, Workshops and Phd Forum (IPDPSW), 2010 IEEE International Symposium on},
title={Measuring properties of molecular surfaces using ray casting},
year={2010},
month={april},
volume={},
number={},
pages={1 -7},
keywords={internal cavities;molecular geometric properties;molecular modeling;molecular surface models;molecular surfaces;ray casting;biology computing;molecular biophysics;ray tracing;},
doi={10.1109/IPDPSW.2010.5470898},
ISSN={},}
@misc{cgal,